J3_7N2V_006
3D structure
- PDB id
- 7N2V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7N2V_006 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0914
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7N2V|1|16|U|943
7N2V|1|16|G|944
7N2V|1|16|G|945
7N2V|1|16|A|946
*
7N2V|1|16|U|1235
7N2V|1|16|A|1236
7N2V|1|16|C|1237
*
7N2V|1|16|G|1337
7N2V|1|16|G|1338
7N2V|1|16|A|1339
7N2V|1|16|A|1340
Current chains
- Chain 16
- 16S rRNA
Nearby chains
- Chain Dt
- Transfer RNA; tRNA
- Chain SI
- 30S ribosomal protein S9
- Chain SM
- 30S ribosomal protein S13
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