J3_7N2V_013

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7N2V|1|16|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N2V_013 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1227

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7N2V|1|16|C|1237
7N2V|1|16|A|1238
7N2V|1|16|A|1239
7N2V|1|16|U|1240
7N2V|1|16|G|1241
*
7N2V|1|16|C|1296
7N2V|1|16|G|1297
7N2V|1|16|U|1298
7N2V|1|16|A|1299
7N2V|1|16|G|1300
7N2V|1|16|U|1301
7N2V|1|16|C|1302
7N2V|1|16|C|1303
*
7N2V|1|16|G|1334
7N2V|1|16|U|1335
7N2V|1|16|C|1336
7N2V|1|16|G|1337

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SG

30S ribosomal protein S7

Chain SM

30S ribosomal protein S13