J3_7N30_028

3D structure

PDB id

7N30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7N30|1|16|C|48, 7N30|1|16|A|50, 7N30|1|16|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N30_028 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.065

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7N30|1|16|G|46
7N30|1|16|C|47
7N30|1|16|C|48
7N30|1|16|U|49
7N30|1|16|A|50
7N30|1|16|A|51
7N30|1|16|C|52
*
7N30|1|16|G|359
7N30|1|16|G|360
7N30|1|16|G|361
7N30|1|16|G|362
7N30|1|16|A|363
7N30|1|16|A|364
7N30|1|16|U|365
7N30|1|16|A|366
7N30|1|16|U|367
*
7N30|1|16|A|393
7N30|1|16|G|394
7N30|1|16|C|395

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SL

30S ribosomal protein S12

Chain SP

30S ribosomal protein S16