J3_7N8B_020
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7N8B|1|B5|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7N8B_020 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.0779
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7N8B|1|B5|A|881
7N8B|1|B5|U|882
7N8B|1|B5|C|883
7N8B|1|B5|A|884
*
7N8B|1|B5|U|928
7N8B|1|B5|A|929
7N8B|1|B5|A|930
7N8B|1|B5|C|931
7N8B|1|B5|U|932
7N8B|1|B5|A|933
7N8B|1|B5|C|934
7N8B|1|B5|U|935
7N8B|1|B5|G|936
*
7N8B|1|B5|C|943
7N8B|1|B5|A|944
7N8B|1|B5|U|945
7N8B|1|B5|U|946
7N8B|1|B5|U|947
Current chains
- Chain B5
- 18S RIBOSOMAL RNA
Nearby chains
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BB
- 40S ribosomal protein S1-A
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- 40S ribosomal protein S26-B
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