J3_7N8B_025
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 7N8B|1|B5|A|1217, 7N8B|1|B5|G|1445
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7N8B_025 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1217
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7N8B|1|B5|C|1215
7N8B|1|B5|C|1216
7N8B|1|B5|A|1217
7N8B|1|B5|G|1218
7N8B|1|B5|A|1219
7N8B|1|B5|C|1220
*
7N8B|1|B5|G|1263
7N8B|1|B5|G|1264
7N8B|1|B5|G|1265
7N8B|1|B5|U|1266
7N8B|1|B5|G|1267
*
7N8B|1|B5|U|1442
7N8B|1|B5|U|1443
7N8B|1|B5|A|1444
7N8B|1|B5|G|1445
7N8B|1|B5|A|1446
7N8B|1|B5|C|1447
7N8B|1|B5|G|1448
Current chains
- Chain B5
- 18S RIBOSOMAL RNA
Nearby chains
- Chain BK
- 40S ribosomal protein S10-A
- Chain BM
- 40S ribosomal protein S12
- Chain Bd
- 40S ribosomal protein S29-A
- Chain Bf
- 40S ribosomal protein S31
Coloring options: