3D structure

PDB id
7NAC (explore in PDB, NAKB, or RNA 3D Hub)
Description
State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CGAUAGCGAACAAGUAC*GGAAAG*CUUG
Length
27 nucleotides
Bulged bases
7NAC|1|1|U|343, 7NAC|1|1|A|351, 7NAC|1|2|U|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NAC_013 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0751
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

7NAC|1|1|C|340
7NAC|1|1|G|341
7NAC|1|1|A|342
7NAC|1|1|U|343
7NAC|1|1|A|344
7NAC|1|1|G|345
7NAC|1|1|C|346
7NAC|1|1|G|347
7NAC|1|1|A|348
7NAC|1|1|A|349
7NAC|1|1|C|350
7NAC|1|1|A|351
7NAC|1|1|A|352
7NAC|1|1|G|353
7NAC|1|1|U|354
7NAC|1|1|A|355
7NAC|1|1|C|356
*
7NAC|1|1|G|363
7NAC|1|1|G|364
7NAC|1|1|A|365
7NAC|1|1|A|366
7NAC|1|1|A|367
7NAC|1|1|G|368
*
7NAC|1|2|C|21
7NAC|1|2|U|22
7NAC|1|2|U|23
7NAC|1|2|G|24

Current chains

Chain 1
25S rRNA
Chain 2
5.8S rRNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain Y
60S ribosomal protein L26-A
Chain j
60S ribosomal protein L37-A
Chain v
Nucleolar protein 16

Coloring options:


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