J3_7NAU_004

3D structure

PDB id

7NAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state C (Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7NAU|1|A|U|871, 7NAU|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NAU_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1066

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7NAU|1|A|C|826
7NAU|1|A|U|827
7NAU|1|A|U|828
7NAU|1|A|G|829
*
7NAU|1|A|C|857
7NAU|1|A|G|858
7NAU|1|A|G|859
7NAU|1|A|A|860
7NAU|1|A|G|861
*
7NAU|1|A|C|868
7NAU|1|A|G|869
7NAU|1|A|U|870
7NAU|1|A|U|871
7NAU|1|A|A|872
7NAU|1|A|A|873
7NAU|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8