J3_7NAW_007

3D structure

PDB id

7NAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.05 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NAW_007 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1383

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7NAW|1|A|C|936
7NAW|1|A|A|937
7NAW|1|A|A|938
7NAW|1|A|G|939
*
7NAW|1|A|C|1344
7NAW|1|A|U|1345
7NAW|1|A|A|1346
7NAW|1|A|G|1347
7NAW|1|A|U|1348
7NAW|1|A|A|1349
7NAW|1|A|A|1350
*
7NAW|1|A|U|1372
7NAW|1|A|G|1373
7NAW|1|A|A|1374
7NAW|1|A|A|1375
7NAW|1|A|U|1376
7NAW|1|A|A|1377
7NAW|1|A|C|1378
7NAW|1|A|G|1379

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9