J3_7NAW_017

3D structure

PDB id

7NAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.05 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7NAW|1|A|U|1240, 7NAW|1|A|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NAW_017 not in the Motif Atlas

Homologous match to J3_6CZR_026

Geometric discrepancy: 0.2327

The information below is about J3_6CZR_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

7NAW|1|A|C|1237
7NAW|1|A|A|1238
7NAW|1|A|A|1239
7NAW|1|A|U|1240
7NAW|1|A|G|1241
*
7NAW|1|A|C|1296
7NAW|1|A|G|1297
7NAW|1|A|U|1298
7NAW|1|A|A|1299
7NAW|1|A|G|1300
7NAW|1|A|U|1301
7NAW|1|A|C|1302
7NAW|1|A|C|1303
*
7NAW|1|A|G|1334
7NAW|1|A|U|1335
7NAW|1|A|C|1336
7NAW|1|A|G|1337

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain M

Small ribosomal subunit protein uS13