J3_7NBU_019

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7NBU|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NBU_019 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1157

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7NBU|1|a|C|1306
7NBU|1|a|A|1307
7NBU|1|a|A|1308
7NBU|1|a|G|1309
*
7NBU|1|a|C|1605
7NBU|1|a|C|1606
7NBU|1|a|C|1607
7NBU|1|a|A|1608
7NBU|1|a|A|1609
7NBU|1|a|A|1610
7NBU|1|a|C|1611
*
7NBU|1|a|G|1620
7NBU|1|a|U|1621
7NBU|1|a|G|1622

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34