J3_7NBU_036

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NBU_036 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0779

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7NBU|1|a|G|1424
7NBU|1|a|G|1425
7NBU|1|a|G|1426
7NBU|1|a|A|1427
7NBU|1|a|C|1428
7NBU|1|a|G|1429
*
7NBU|1|a|C|1564
7NBU|1|a|C|1565
*
7NBU|1|a|G|1568
7NBU|1|a|A|1569
7NBU|1|a|A|1570
7NBU|1|a|A|1571
7NBU|1|a|A|1572
7NBU|1|a|G|1573
7NBU|1|a|C|1574

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2