J3_7NHK_032

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHK_032 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0901

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7NHK|1|A|G|1465
7NHK|1|A|G|1466
7NHK|1|A|G|1467
7NHK|1|A|A|1468
7NHK|1|A|C|1469
7NHK|1|A|G|1470
*
7NHK|1|A|C|1609
7NHK|1|A|C|1610
*
7NHK|1|A|G|1613
7NHK|1|A|A|1614
7NHK|1|A|A|1615
7NHK|1|A|A|1616
7NHK|1|A|A|1617
7NHK|1|A|G|1618
7NHK|1|A|C|1619

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2