J3_7NHL_026

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

7NHL|1|a|U|1251, 7NHL|1|a|U|1313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHL_026 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1389

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7NHL|1|a|C|1248
7NHL|1|a|A|1249
7NHL|1|a|A|1250
7NHL|1|a|U|1251
7NHL|1|a|G|1252
*
7NHL|1|a|C|1307
7NHL|1|a|U|1308
7NHL|1|a|C|1309
7NHL|1|a|A|1310
7NHL|1|a|G|1311
7NHL|1|a|U|1312
7NHL|1|a|U|1313
7NHL|1|a|C|1314
*
7NHL|1|a|G|1345
7NHL|1|a|C|1346
7NHL|1|a|U|1347
7NHL|1|a|G|1348

Current chains

Chain a

16S rRNA

Nearby chains

Chain 0

Lincosamide-streptogramin A resistance protein

Chain h

30S ribosomal protein S7

Chain n

30S ribosomal protein S13