J3_7NHL_030

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHL_030 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.2558

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

7NHL|1|A|G|1099
7NHL|1|A|G|1100
7NHL|1|A|A|1101
*
7NHL|1|A|U|1125
7NHL|1|A|U|1126
7NHL|1|A|U|1127
7NHL|1|A|A|1128
7NHL|1|A|A|1129
7NHL|1|A|A|1130
7NHL|1|A|G|1131
*
7NHL|1|A|C|1146
7NHL|1|A|A|1147
7NHL|1|A|C|1148

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36