J3_7NHM_011

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GAG*CAUAAG

Length

12 nucleotides

Bulged bases

7NHM|1|A|U|2361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHM_011 not in the Motif Atlas

Homologous match to J3_4WF9_008

Geometric discrepancy: 0.1876

The information below is about J3_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

7NHM|1|A|C|2322
7NHM|1|A|U|2323
7NHM|1|A|C|2324
*
7NHM|1|A|G|2348
7NHM|1|A|A|2349
7NHM|1|A|G|2350
*
7NHM|1|A|C|2359
7NHM|1|A|A|2360
7NHM|1|A|U|2361
7NHM|1|A|A|2362
7NHM|1|A|A|2363
7NHM|1|A|G|2364

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain D

Transfer RNA; tRNA

Chain J

50S ribosomal protein L5

Chain R

50S ribosomal protein L18

Chain Z

50S ribosomal protein L27