J3_7NHM_035
3D structure
- PDB id
- 7NHM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 7NHM|1|a|C|49, 7NHM|1|a|A|51, 7NHM|1|a|A|52
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHM_035 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.1034
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7NHM|1|a|G|47
7NHM|1|a|C|48
7NHM|1|a|C|49
7NHM|1|a|U|50
7NHM|1|a|A|51
7NHM|1|a|A|52
7NHM|1|a|U|53
*
7NHM|1|a|A|367
7NHM|1|a|G|368
7NHM|1|a|G|369
7NHM|1|a|G|370
7NHM|1|a|A|371
7NHM|1|a|A|372
7NHM|1|a|U|373
7NHM|1|a|C|374
7NHM|1|a|U|375
*
7NHM|1|a|A|401
7NHM|1|a|G|402
7NHM|1|a|C|403
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain m
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S16
Coloring options: