J3_7NHN_006

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

7NHN|1|A|A|1130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHN_006 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1932

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

7NHN|1|A|G|1101
7NHN|1|A|G|1102
7NHN|1|A|A|1103
*
7NHN|1|A|U|1127
7NHN|1|A|U|1128
7NHN|1|A|G|1129
7NHN|1|A|A|1130
7NHN|1|A|A|1131
7NHN|1|A|A|1132
7NHN|1|A|G|1133
*
7NHN|1|A|C|1148
7NHN|1|A|A|1149
7NHN|1|A|C|1150

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36