J3_7NHN_016

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAUGG*CG*UCG

Length

11 nucleotides

Bulged bases

7NHN|1|B|U|10, 7NHN|1|B|U|12, 7NHN|1|B|C|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHN_016 not in the Motif Atlas

Homologous match to J3_9DFE_020

Geometric discrepancy: 0.5956

The information below is about J3_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_26985.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

8

Unit IDs

7NHN|1|B|U|9
7NHN|1|B|U|10
7NHN|1|B|A|11
7NHN|1|B|U|12
7NHN|1|B|G|13
7NHN|1|B|G|14
*
7NHN|1|B|C|66
7NHN|1|B|G|67
*
7NHN|1|B|U|105
7NHN|1|B|C|106
7NHN|1|B|G|107

Current chains

Chain B

5S rRNA

Nearby chains

Chain Z

50S ribosomal protein L27