J3_7NHN_020
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAA*UGCAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 7NHN|1|a|U|882
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHN_020 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.1244
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
7NHN|1|a|C|836
7NHN|1|a|U|837
7NHN|1|a|A|838
7NHN|1|a|A|839
*
7NHN|1|a|U|868
7NHN|1|a|G|869
7NHN|1|a|C|870
7NHN|1|a|A|871
7NHN|1|a|G|872
*
7NHN|1|a|C|879
7NHN|1|a|A|880
7NHN|1|a|U|881
7NHN|1|a|U|882
7NHN|1|a|A|883
7NHN|1|a|A|884
7NHN|1|a|G|885
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- RNA (5'-R(P*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3')
- Chain c
- 30S ribosomal protein S2
- Chain f
- 30S ribosomal protein S5
- Chain i
- 30S ribosomal protein S8
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