J3_7NQH_004

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NQH_004 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1227

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NQH|1|AA|A|549
7NQH|1|AA|G|550
7NQH|1|AA|G|551
7NQH|1|AA|A|552
*
7NQH|1|AA|U|719
7NQH|1|AA|A|720
7NQH|1|AA|C|721
*
7NQH|1|AA|G|781
7NQH|1|AA|G|782
7NQH|1|AA|A|783
7NQH|1|AA|U|784

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

28S ribosomal protein S7, mitochondrial

Chain AI

uS9m

Chain AV

tRNAMet