J3_7NRC_004
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 7NRC|1|LA|A|817, 7NRC|1|LA|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRC_004 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0786
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7NRC|1|LA|U|814
7NRC|1|LA|G|815
7NRC|1|LA|A|816
7NRC|1|LA|A|817
7NRC|1|LA|C|818
7NRC|1|LA|U|819
7NRC|1|LA|A|820
*
7NRC|1|LA|U|905
7NRC|1|LA|A|906
7NRC|1|LA|G|907
*
7NRC|1|LA|C|923
7NRC|1|LA|G|924
7NRC|1|LA|A|925
7NRC|1|LA|A|926
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
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