3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
7NRC|1|LA|A|2887, 7NRC|1|LA|U|2888
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7NRC_015 not in the Motif Atlas
Homologous match to J3_8C3A_011
Geometric discrepancy: 0.0828
The information below is about J3_8C3A_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

7NRC|1|LA|U|2886
7NRC|1|LA|A|2887
7NRC|1|LA|U|2888
7NRC|1|LA|C|2889
*
7NRC|1|LA|G|2914
7NRC|1|LA|U|2915
7NRC|1|LA|U|2916
*
7NRC|1|LA|A|2930
7NRC|1|LA|C|2931
7NRC|1|LA|U|2932
7NRC|1|LA|A|2933
7NRC|1|LA|A|2934
7NRC|1|LA|U|2935
7NRC|1|LA|A|2936

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LE
60S ribosomal protein L3
Chain LQ
60S ribosomal protein L16-A
Chain LX
60S ribosomal protein L23-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1732 s