J3_7NRC_015

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

7NRC|1|LA|A|2887, 7NRC|1|LA|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NRC_015 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.0828

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

7NRC|1|LA|U|2886
7NRC|1|LA|A|2887
7NRC|1|LA|U|2888
7NRC|1|LA|C|2889
*
7NRC|1|LA|G|2914
7NRC|1|LA|U|2915
7NRC|1|LA|U|2916
*
7NRC|1|LA|A|2930
7NRC|1|LA|C|2931
7NRC|1|LA|U|2932
7NRC|1|LA|A|2933
7NRC|1|LA|A|2934
7NRC|1|LA|U|2935
7NRC|1|LA|A|2936

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L16-A

Chain LX

60S ribosomal protein L23-A