J3_7NRC_026
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 7NRC|1|S2|A|1217, 7NRC|1|S2|G|1445, 7NRC|1|S2|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRC_026 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1604
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7NRC|1|S2|C|1215
7NRC|1|S2|C|1216
7NRC|1|S2|A|1217
7NRC|1|S2|G|1218
7NRC|1|S2|A|1219
7NRC|1|S2|C|1220
*
7NRC|1|S2|G|1263
7NRC|1|S2|G|1264
7NRC|1|S2|G|1265
7NRC|1|S2|U|1266
7NRC|1|S2|G|1267
*
7NRC|1|S2|U|1442
7NRC|1|S2|U|1443
7NRC|1|S2|A|1444
7NRC|1|S2|G|1445
7NRC|1|S2|A|1446
7NRC|1|S2|C|1447
7NRC|1|S2|G|1448
Current chains
- Chain S2
- 18S rRNA (1771-MER)
Nearby chains
- Chain SC
- 40S ribosomal protein S10-A
- Chain SM
- 40S ribosomal protein S29-A
- Chain SN
- 40S ribosomal protein S31
Coloring options: