J3_7NRD_001
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 7NRD|1|LA|U|117, 7NRD|1|LA|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.1116
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|LA|C|113
7NRD|1|LA|A|114
7NRD|1|LA|A|115
7NRD|1|LA|A|116
7NRD|1|LA|U|117
7NRD|1|LA|U|118
7NRD|1|LA|U|119
7NRD|1|LA|G|120
7NRD|1|LA|A|121
7NRD|1|LA|A|122
7NRD|1|LA|A|123
*
7NRD|1|LA|U|149
7NRD|1|LA|A|150
7NRD|1|LA|A|151
7NRD|1|LA|U|152
7NRD|1|LA|U|153
7NRD|1|LA|U|154
7NRD|1|LA|G|155
7NRD|1|LA|G|156
7NRD|1|LA|A|157
7NRD|1|LA|G|158
*
7NRD|1|LA|C|263
7NRD|1|LA|G|264
7NRD|1|LA|A|265
7NRD|1|LA|A|266
7NRD|1|LA|G|267
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Lk
- 60S ribosomal protein L36-A
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