J3_7NRD_003
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 7NRD|1|LA|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_003 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1453
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|LA|U|502
7NRD|1|LA|C|503
*
7NRD|1|LA|G|588
7NRD|1|LA|A|589
7NRD|1|LA|G|590
7NRD|1|LA|G|591
7NRD|1|LA|A|592
7NRD|1|LA|C|593
7NRD|1|LA|U|594
7NRD|1|LA|G|595
7NRD|1|LA|C|596
7NRD|1|LA|G|597
*
7NRD|1|LA|C|606
7NRD|1|LA|A|607
7NRD|1|LA|A|608
7NRD|1|LA|G|609
7NRD|1|LA|G|610
7NRD|1|LA|A|611
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LH
- 60S ribosomal protein L6-B
- Chain LI
- 60S ribosomal protein L7-A
- Chain Lg
- 60S ribosomal protein L32
Coloring options: