J3_7NRD_005
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 7NRD|1|LA|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_005 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1296
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7NRD|1|LA|A|828
7NRD|1|LA|U|829
7NRD|1|LA|A|830
7NRD|1|LA|G|831
*
7NRD|1|LA|C|863
7NRD|1|LA|G|864
7NRD|1|LA|U|865
7NRD|1|LA|A|866
7NRD|1|LA|G|867
*
7NRD|1|LA|U|892
7NRD|1|LA|C|893
7NRD|1|LA|G|894
7NRD|1|LA|A|895
7NRD|1|LA|A|896
7NRD|1|LA|U|897
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LT
- 60S ribosomal protein L19-A
- Chain Li
- 60S ribosomal protein L34-A
Coloring options: