J3_7NRD_007

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NRD_007 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.3707

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

7NRD|1|LA|G|1230
7NRD|1|LA|A|1231
7NRD|1|LA|C|1232
*
7NRD|1|LA|G|1256
7NRD|1|LA|C|1257
7NRD|1|LA|U|1258
7NRD|1|LA|A|1259
7NRD|1|LA|A|1260
7NRD|1|LA|G|1261
7NRD|1|LA|G|1262
*
7NRD|1|LA|C|1277
7NRD|1|LA|A|1278
7NRD|1|LA|C|1279

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains