J3_7NRD_008

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

7NRD|1|LA|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NRD_008 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1194

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7NRD|1|LA|U|1479
7NRD|1|LA|G|1480
7NRD|1|LA|A|1481
7NRD|1|LA|A|1482
7NRD|1|LA|G|1483
7NRD|1|LA|U|1484
7NRD|1|LA|G|1485
*
7NRD|1|LA|C|1857
7NRD|1|LA|A|1858
7NRD|1|LA|A|1859
*
7NRD|1|LA|U|1871
7NRD|1|LA|C|1872
7NRD|1|LA|U|1873
7NRD|1|LA|A|1874

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain Li

60S ribosomal protein L34-A