J3_7NRD_010
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_010 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.171
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7NRD|1|LA|U|1526
7NRD|1|LA|C|1527
7NRD|1|LA|G|1528
7NRD|1|LA|A|1529
7NRD|1|LA|U|1530
7NRD|1|LA|C|1531
*
7NRD|1|LA|G|1591
7NRD|1|LA|G|1592
7NRD|1|LA|A|1593
7NRD|1|LA|A|1594
7NRD|1|LA|U|1595
*
7NRD|1|LA|A|1612
7NRD|1|LA|A|1613
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LZ
- 60S ribosomal protein L25
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lm
- 60S ribosomal protein L38
- Chain Ln
- 60S ribosomal protein L39
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