J3_7NRD_012
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_012 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.1217
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|LA|A|2432
7NRD|1|LA|U|2433
7NRD|1|LA|U|2434
7NRD|1|LA|G|2435
*
7NRD|1|LA|C|2512
7NRD|1|LA|U|2513
7NRD|1|LA|U|2514
7NRD|1|LA|A|2515
7NRD|1|LA|U|2516
7NRD|1|LA|U|2517
*
7NRD|1|LA|A|2590
7NRD|1|LA|A|2591
7NRD|1|LA|G|2592
7NRD|1|LA|A|2593
7NRD|1|LA|C|2594
7NRD|1|LA|A|2595
7NRD|1|LA|U|2596
7NRD|1|LA|U|2597
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lk
- 60S ribosomal protein L36-A
Coloring options: