J3_7NRD_022
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_022 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.1553
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRD|1|S2|C|1037
7NRD|1|S2|U|1038
7NRD|1|S2|A|1039
*
7NRD|1|S2|U|1079
7NRD|1|S2|U|1080
7NRD|1|S2|A|1081
7NRD|1|S2|C|1082
7NRD|1|S2|G|1083
*
7NRD|1|S2|C|1090
7NRD|1|S2|A|1091
7NRD|1|S2|A|1092
7NRD|1|S2|A|1093
7NRD|1|S2|G|1094
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SP
- 40S ribosomal protein S0-A
- Chain Sa
- 40S ribosomal protein S21-A
- Chain Sb
- 40S ribosomal protein S22-A
- Chain Se
- 40S ribosomal protein S26-B
- Chain Sf
- 40S ribosomal protein S27-A
Coloring options: