J3_7NRD_027
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 7NRD|1|S2|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_027 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.2114
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7NRD|1|S2|U|1283
7NRD|1|S2|C|1284
7NRD|1|S2|U|1285
7NRD|1|S2|U|1286
7NRD|1|S2|A|1287
7NRD|1|S2|G|1288
*
7NRD|1|S2|C|1327
7NRD|1|S2|G|1328
7NRD|1|S2|A|1329
7NRD|1|S2|G|1330
7NRD|1|S2|A|1331
7NRD|1|S2|C|1332
*
7NRD|1|S2|G|1419
7NRD|1|S2|C|1420
7NRD|1|S2|A|1421
7NRD|1|S2|A|1422
7NRD|1|S2|U|1423
7NRD|1|S2|A|1424
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SA
- 40S ribosomal protein S3
- Chain SF
- 40S ribosomal protein S16-A
- Chain SG
- 40S ribosomal protein S17-B
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
- Chain SR
- 40S ribosomal protein S2
Coloring options: