J3_7NRD_028
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_028 not in the Motif Atlas
- Homologous match to J3_8C3A_085
- Geometric discrepancy: 0.156
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7NRD|1|S2|U|1293
7NRD|1|S2|G|1294
*
7NRD|1|S2|U|1303
7NRD|1|S2|G|1304
7NRD|1|S2|U|1305
7NRD|1|S2|C|1306
*
7NRD|1|S2|G|1318
7NRD|1|S2|A|1319
7NRD|1|S2|U|1320
7NRD|1|S2|A|1321
7NRD|1|S2|A|1322
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SG
- 40S ribosomal protein S17-B
- Chain SP
- 40S ribosomal protein S0-A
- Chain SR
- 40S ribosomal protein S2
Coloring options: