J3_7NRD_029
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 7NRD|1|S2|U|1413, 7NRD|1|S2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_029 not in the Motif Atlas
- Homologous match to J3_4V88_040
- Geometric discrepancy: 0.1483
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7NRD|1|S2|A|1336
7NRD|1|S2|A|1337
7NRD|1|S2|C|1338
*
7NRD|1|S2|G|1386
7NRD|1|S2|G|1387
7NRD|1|S2|A|1388
7NRD|1|S2|C|1389
*
7NRD|1|S2|G|1412
7NRD|1|S2|U|1413
7NRD|1|S2|U|1414
7NRD|1|S2|U|1415
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SB
- 40S ribosomal protein S5
- Chain SF
- 40S ribosomal protein S16-A
- Chain SG
- 40S ribosomal protein S17-B
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
- Chain SO
- Guanine nucleotide-binding protein subunit beta-like protein
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