J3_7NRD_030
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 7NRD|1|S2|U|1473
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_030 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.1962
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|S2|C|1470
7NRD|1|S2|A|1471
7NRD|1|S2|C|1472
7NRD|1|S2|U|1473
7NRD|1|S2|G|1474
*
7NRD|1|S2|C|1533
7NRD|1|S2|G|1534
7NRD|1|S2|U|1535
7NRD|1|S2|G|1536
7NRD|1|S2|C|1537
7NRD|1|S2|U|1538
7NRD|1|S2|G|1539
7NRD|1|S2|G|1540
*
7NRD|1|S2|C|1571
7NRD|1|S2|G|1572
7NRD|1|S2|A|1573
7NRD|1|S2|G|1574
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SB
- 40S ribosomal protein S5
- Chain SH
- 40S ribosomal protein S18-A
- Chain SI
- 40S ribosomal protein S19-A
- Chain SK
- 40S ribosomal protein S25-A
Coloring options: