J3_7NRD_033
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 7NRD|1|LA|U|343, 7NRD|1|LA|A|351, 7NRD|1|LC|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_033 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.1094
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7NRD|1|LA|C|340
7NRD|1|LA|G|341
7NRD|1|LA|A|342
7NRD|1|LA|U|343
7NRD|1|LA|A|344
7NRD|1|LA|G|345
7NRD|1|LA|C|346
7NRD|1|LA|G|347
7NRD|1|LA|A|348
7NRD|1|LA|A|349
7NRD|1|LA|C|350
7NRD|1|LA|A|351
7NRD|1|LA|A|352
7NRD|1|LA|G|353
7NRD|1|LA|U|354
7NRD|1|LA|A|355
7NRD|1|LA|C|356
*
7NRD|1|LA|G|363
7NRD|1|LA|G|364
7NRD|1|LA|A|365
7NRD|1|LA|A|366
7NRD|1|LA|A|367
7NRD|1|LA|G|368
*
7NRD|1|LC|C|21
7NRD|1|LC|U|22
7NRD|1|LC|U|23
7NRD|1|LC|G|24
Current chains
- Chain LA
- 25S rRNA (3184-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
Coloring options: