J3_7NRD_034
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 7NRD|1|LA|A|398, 7NRD|1|LA|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_034 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.1144
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7NRD|1|LA|A|369
7NRD|1|LA|U|370
7NRD|1|LA|G|371
7NRD|1|LA|A|372
7NRD|1|LA|A|373
7NRD|1|LA|A|374
7NRD|1|LA|A|375
7NRD|1|LA|G|376
7NRD|1|LA|A|377
7NRD|1|LA|A|378
7NRD|1|LA|C|379
*
7NRD|1|LA|G|390
7NRD|1|LA|A|391
7NRD|1|LA|G|392
7NRD|1|LA|U|393
7NRD|1|LA|G|394
7NRD|1|LA|A|395
7NRD|1|LA|A|396
7NRD|1|LA|A|397
7NRD|1|LA|A|398
7NRD|1|LA|A|399
7NRD|1|LA|G|400
7NRD|1|LA|U|401
7NRD|1|LA|A|402
7NRD|1|LA|C|403
7NRD|1|LA|G|404
*
7NRD|1|LC|C|19
7NRD|1|LC|U|20
Current chains
- Chain LA
- 25S rRNA (3184-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Ln
- 60S ribosomal protein L39
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