J3_7NRD_035
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CACCAU
- Length
- 23 nucleotides
- Bulged bases
- 7NRD|1|LA|C|1556, 7NRD|1|LA|A|1558, 7NRD|1|LA|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRD|1|LA|A|1537
7NRD|1|LA|G|1538
7NRD|1|LA|A|1539
7NRD|1|LA|U|1540
7NRD|1|LA|G|1541
7NRD|1|LA|G|1542
*
7NRD|1|LA|C|1551
7NRD|1|LA|G|1552
7NRD|1|LA|U|1553
7NRD|1|LA|U|1554
7NRD|1|LA|U|1555
7NRD|1|LA|C|1556
7NRD|1|LA|A|1557
7NRD|1|LA|A|1558
7NRD|1|LA|A|1559
7NRD|1|LA|G|1560
7NRD|1|LA|G|1561
*
7NRD|1|LA|C|1579
7NRD|1|LA|A|1580
7NRD|1|LA|C|1581
7NRD|1|LA|C|1582
7NRD|1|LA|A|1583
7NRD|1|LA|U|1584
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Ll
- 60S ribosomal protein L37-A
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