J3_7NRD_036

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NRD_036 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1252

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7NRD|1|LA|A|1654
7NRD|1|LA|G|1655
7NRD|1|LA|A|1656
7NRD|1|LA|C|1657
7NRD|1|LA|G|1658
*
7NRD|1|LA|C|1791
7NRD|1|LA|C|1792
*
7NRD|1|LA|G|1796
7NRD|1|LA|A|1797
7NRD|1|LA|A|1798
7NRD|1|LA|A|1799
7NRD|1|LA|A|1800
7NRD|1|LA|U|1801

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain Li

60S ribosomal protein L34-A

Chain Lr

60S ribosomal protein L43-A