J3_7NRD_037
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 7NRD|1|LA|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NRD_037 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1262
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7NRD|1|LA|G|2651
7NRD|1|LA|U|2652
7NRD|1|LA|C|2653
*
7NRD|1|LA|G|2754
7NRD|1|LA|C|2755
7NRD|1|LA|C|2756
7NRD|1|LA|U|2757
7NRD|1|LA|A|2758
7NRD|1|LA|U|2759
7NRD|1|LA|C|2760
7NRD|1|LA|G|2761
7NRD|1|LA|A|2762
7NRD|1|LA|U|2763
7NRD|1|LA|C|2764
7NRD|1|LA|C|2765
*
7NRD|1|LA|G|2793
7NRD|1|LA|G|2794
7NRD|1|LA|U|2795
7NRD|1|LA|G|2796
7NRD|1|LA|C|2797
7NRD|1|LA|C|2798
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LS
- 60S ribosomal protein L18-A
- Chain LV
- 60S ribosomal protein L21-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lq
- 60S ribosomal protein L42-A
- Chain Sm
- Transfer RNA; tRNA
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