J3_7NSO_005

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NSO_005 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.216

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

7NSO|1|A|G|1055
7NSO|1|A|G|1056
7NSO|1|A|A|1057
*
7NSO|1|A|U|1081
7NSO|1|A|U|1082
7NSO|1|A|U|1083
7NSO|1|A|A|1084
7NSO|1|A|A|1085
7NSO|1|A|A|1086
7NSO|1|A|G|1087
*
7NSO|1|A|C|1102
7NSO|1|A|A|1103
7NSO|1|A|C|1104

Current chains

Chain A

23S rRNA (2903-MER)

Nearby chains

Chain 4

50S ribosomal protein L36