J3_7NWG_015

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWG_015 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1896

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7NWG|1|A2|A|40
7NWG|1|A2|G|41
*
7NWG|1|A2|C|481
7NWG|1|A2|G|482
7NWG|1|A2|C|483
7NWG|1|A2|A|484
7NWG|1|A2|A|485
7NWG|1|A2|A|486
7NWG|1|A2|U|487
*
7NWG|1|A2|A|512
7NWG|1|A2|G|513
7NWG|1|A2|U|514

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain K2

40S ribosomal protein S9

Chain Y2

Ribosomal protein S23