J3_7NWG_017

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWG_017 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.2567

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

7NWG|1|A2|A|816
7NWG|1|A2|G|817
7NWG|1|A2|A|818
7NWG|1|A2|G|819
*
7NWG|1|A2|C|829
7NWG|1|A2|A|830
7NWG|1|A2|G|831
*
7NWG|1|A2|C|843
7NWG|1|A2|U|844
7NWG|1|A2|G|845
7NWG|1|A2|G|846
7NWG|1|A2|A|847
7NWG|1|A2|U|848

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain F2

S4

Chain K2

40S ribosomal protein S9

Chain Z2

40S ribosomal protein S24