J3_7NWG_021
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWG_021 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.2383
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7NWG|1|A2|U|1340
7NWG|1|A2|C|1341
7NWG|1|A2|U|1342
7NWG|1|A2|U|1343
7NWG|1|A2|A|1344
7NWG|1|A2|G|1345
*
7NWG|1|A2|C|1384
7NWG|1|A2|G|1385
7NWG|1|A2|A|1386
7NWG|1|A2|G|1387
7NWG|1|A2|A|1388
7NWG|1|A2|C|1389
*
7NWG|1|A2|G|1481
7NWG|1|A2|C|1482
7NWG|1|A2|A|1483
7NWG|1|A2|A|1484
7NWG|1|A2|U|1485
7NWG|1|A2|A|1486
Current chains
- Chain A2
- 18S Ribosomal RNA
Nearby chains
- Chain D2
- 40S ribosomal protein S2
- Chain E2
- 40S ribosomal protein S3
- Chain R2
- Ribosomal protein S16
- Chain S2
- 40S ribosomal protein S17
- Chain V2
- 40S ribosomal protein S20
- Chain e2
- uS14
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