J3_7NWG_022

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWG_022 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.2002

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7NWG|1|A2|U|1350
7NWG|1|A2|G|1351
*
7NWG|1|A2|U|1360
7NWG|1|A2|G|1361
7NWG|1|A2|U|1362
7NWG|1|A2|C|1363
*
7NWG|1|A2|G|1375
7NWG|1|A2|A|1376
7NWG|1|A2|U|1377
7NWG|1|A2|A|1378
7NWG|1|A2|A|1379

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain B2

40S ribosomal protein SA

Chain D2

40S ribosomal protein S2

Chain S2

40S ribosomal protein S17