J3_7NWG_035

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

7NWG|1|51|U|4374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWG_035 not in the Motif Atlas

Homologous match to J3_8C3A_056

Geometric discrepancy: 0.159

The information below is about J3_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

7NWG|1|51|G|4228
7NWG|1|51|U|4229
7NWG|1|51|C|4230
*
7NWG|1|51|G|4331
7NWG|1|51|C|4332
7NWG|1|51|C|4333
7NWG|1|51|U|4334
7NWG|1|51|C|4335
7NWG|1|51|A|4336
7NWG|1|51|C|4337
7NWG|1|51|G|4338
7NWG|1|51|A|4339
7NWG|1|51|U|4340
7NWG|1|51|C|4341
7NWG|1|51|C|4342
*
7NWG|1|51|G|4370
7NWG|1|51|G|4371
7NWG|1|51|U|4372
7NWG|1|51|G|4373
7NWG|1|51|U|4374
7NWG|1|51|C|4375

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain Q3

L18

Chain T3

eL21

Chain a3

uL15

Chain o3

eL42