J3_7NWH_014
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 7NWH|1|5|A|4464, 7NWH|1|5|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWH_014 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.1512
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NWH|1|5|U|4463
7NWH|1|5|A|4464
7NWH|1|5|U|4465
7NWH|1|5|C|4466
*
7NWH|1|5|G|4491
7NWH|1|5|U|4492
7NWH|1|5|U|4493
*
7NWH|1|5|A|4507
7NWH|1|5|C|4508
7NWH|1|5|U|4509
7NWH|1|5|A|4510
7NWH|1|5|A|4511
7NWH|1|5|U|4512
7NWH|1|5|A|4513
Current chains
- Chain 5
- 28S Ribosomal RNA
Nearby chains
- Chain B
- uL3
- Chain O
- 60S RIBOSOMAL PROTEIN UL13
- Chain V
- eL14
Coloring options: