J3_7NWH_023

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NWH_023 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.2756

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NWH|1|9|C|1218
7NWH|1|9|C|1219
7NWH|1|9|A|1220
7NWH|1|9|G|1221
*
7NWH|1|9|C|1645
7NWH|1|9|C|1646
7NWH|1|9|A|1647
7NWH|1|9|G|1648
7NWH|1|9|U|1649
7NWH|1|9|A|1650
7NWH|1|9|A|1651
*
7NWH|1|9|U|1673
7NWH|1|9|G|1674
7NWH|1|9|A|1675
7NWH|1|9|U|1676
7NWH|1|9|U|1677
7NWH|1|9|A|1678
7NWH|1|9|A|1679
7NWH|1|9|G|1680

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain FF

Ribosomal protein S5

Chain QQ

Ribosomal protein S16

Chain cc

40S ribosomal protein S28