J3_7NWH_041
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7NWH|1|9|G|1274, 7NWH|1|9|G|1507, 7NWH|1|9|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWH_041 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.2919
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7NWH|1|9|C|1272
7NWH|1|9|C|1273
7NWH|1|9|G|1274
7NWH|1|9|G|1275
7NWH|1|9|A|1276
7NWH|1|9|C|1277
*
7NWH|1|9|G|1320
7NWH|1|9|G|1321
7NWH|1|9|G|1322
7NWH|1|9|U|1323
7NWH|1|9|G|1324
*
7NWH|1|9|U|1504
7NWH|1|9|U|1505
7NWH|1|9|A|1506
7NWH|1|9|G|1507
7NWH|1|9|A|1508
7NWH|1|9|U|1509
7NWH|1|9|G|1510
Current chains
- Chain 9
- 18S Ribosomal RNA
Nearby chains
- Chain KK
- 40S ribosomal protein S10
- Chain dd
- S29
- Chain ff
- 40S ribosomal protein S27a
- Chain ii
- Eukaryotic peptide chain release factor subunit 1
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