J3_7NWI_011
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NWI_011 not in the Motif Atlas
- Geometric match to J3_7A0S_009
- Geometric discrepancy: 0.3802
- The information below is about J3_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NWI|1|5|C|3937
7NWI|1|5|G|3938
7NWI|1|5|G|3939
*
7NWI|1|5|C|4074
7NWI|1|5|U|4075
7NWI|1|5|G|4076
7NWI|1|5|A|4077
7NWI|1|5|C|4078
*
7NWI|1|5|G|4168
7NWI|1|5|G|4169
7NWI|1|5|A|4170
7NWI|1|5|C|4171
7NWI|1|5|A|4172
7NWI|1|5|G|4173
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain A
- L8
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
Coloring options: